Portage 2.1.9.42 (selinux/v2refpolicy/amd64/hardened, gcc-4.4.5, libc-0-r0, 2.6.37-gentoo-r4 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-2.6.37-gentoo-r4-x86_64-Intel-R-_Core-TM-_i5_CPU_M_540_@_2.53GHz-with-gentoo-2.0.2 Timestamp of tree: Mon, 23 May 2011 10:15:01 +0000 app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.6.6-r2, 2.7.1-r1, 3.1.3-r1 dev-util/cmake: 2.8.4-r1 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.2-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.13, 2.65-r1 sys-devel/automake: 1.4_p6-r1, 1.8.5-r4, 1.9.6-r3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.81-r2 sys-kernel/linux-headers: 2.6.36.1 sys-libs/glibc: 2.12.2 virtual/os-headers: 0 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/openvpn/easy-rsa /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox selinux sesandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="" GENTOO_MIRRORS="http://mirror.mcs.anl.gov/pub/gentoo/ http://gentoo.chem.wisc.edu/gentoo/ http://mirrors.cs.wmich.edu/gentoo http://www.cyberuse.com/gentoo/ http://mirror.datapipe.net/gentoo http://gentoo.mirrors.easynews.com/linux/gentoo/ http://chi-10g-1-mirror.fastsoft.net/pub/linux/gentoo/gentoo-distfiles/ http://www.gtlib.gatech.edu/pub/gentoo http://gentoo.mirrors.hoobly.com/ http://distro.ibiblio.org/pub/linux/distributions/gentoo/ http://lug.mtu.edu/gentoo/ http://gentoo.netnitco.net http://gentoo.osuosl.org/ http://gentoo.mirrors.pair.com/ http://mirrors.rit.edu/gentoo/ http://mirror.iawnet.sandia.gov/gentoo/ http://gentoo.llarian.net/ http://gentoo.mirrors.tds.net/gentoo http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://mirror.lug.udel.edu/pub/gentoo/ http://mirror.its.uidaho.edu/pub/gentoo/ http://gentoo.cites.uiuc.edu/pub/gentoo/ http://gentoo.cs.uni.edu/ http://mirror.usu.edu/mirrors/gentoo/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/pentoo /usr/local/portage" SYNC="rsync://rsync.us.gentoo.org/gentoo-portage" USE="X alsa amd64 apic berkdb cdr cleartype clflush cli cmov consolekiti constant_tsc corefonts cracklib crypt cx8 cxx dbus de dri dvd fortran fpu fxsr hardened iconv ipv6 kde lahf_lm lm mca mce modules monitor msr mtrr mudflap ncurses nls nx openmp pae pam pat pcre perl pge phonon pic pni policykit pppd pse pse36 python qt3support qt4 readline rep_good selinux sep session ssl syscall tcpd truetype tsc type1 up vme xorg zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sci-biology/hmmer-3.0 was built with the following: USE="mpi (multilib) (sse) threads -gsl"